IL_8EKB_313

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

8EKB|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKB_313 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.0911

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

8EKB|1|2a|G|683
8EKB|1|2a|A|684
8EKB|1|2a|G|685
8EKB|1|2a|U|686
8EKB|1|2a|A|687
8EKB|1|2a|G|688
*
8EKB|1|2a|C|699
8EKB|1|2a|G|700
8EKB|1|2a|C|701
8EKB|1|2a|A|702
8EKB|1|2a|G|703
8EKB|1|2a|A|704
8EKB|1|2a|U|705
8EKB|1|2a|A|706
8EKB|1|2a|C|707

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11