IL_8EKB_353

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

8EKB|1|2A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKB_353 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.0579

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8EKB|1|2A|C|844
8EKB|1|2A|G|845
8EKB|1|2A|C|846
8EKB|1|2A|U|847
8EKB|1|2A|G|848
8EKB|1|2A|A|849
8EKB|1|2A|C|850
*
8EKB|1|2A|G|927
8EKB|1|2A|G|928
8EKB|1|2A|U|930
8EKB|1|2A|G|931
8EKB|1|2A|G|932
8EKB|1|2A|A|933
8EKB|1|2A|G|934

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30