IL_8EKC_089

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

C(PSU)GA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKC_089 not in the Motif Atlas

Geometric match to IL_4OQU_001

Geometric discrepancy: 0.3252

The information below is about IL_4OQU_001

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_15698.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8EKC|1|A|C|2456
8EKC|1|A|PSU|2457
8EKC|1|A|G|2458
8EKC|1|A|A|2459
*
8EKC|1|A|U|2493
8EKC|1|A|G|2494
8EKC|1|A|G|2495

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L16

Chain Y

50S ribosomal protein L27

Chain w

Transfer RNA; tRNA