IL_8EKC_125
3D structure
- PDB id
- 8EKC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 8EKC|1|a|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EKC_125 not in the Motif Atlas
- Homologous match to IL_5J7L_012
- Geometric discrepancy: 0.1383
- The information below is about IL_5J7L_012
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.6
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8EKC|1|a|G|147
8EKC|1|a|G|148
8EKC|1|a|A|149
8EKC|1|a|U|150
8EKC|1|a|A|151
8EKC|1|a|A|152
8EKC|1|a|C|153
*
8EKC|1|a|G|168
8EKC|1|a|C|169
8EKC|1|a|U|170
8EKC|1|a|A|171
8EKC|1|a|A|172
8EKC|1|a|U|173
8EKC|1|a|A|174
8EKC|1|a|C|175
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain t
- 30S ribosomal protein S20
Coloring options: