IL_8EKC_169
3D structure
- PDB id
- 8EKC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UACAAAG*CAUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 8EKC|1|a|U|1286
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EKC_169 not in the Motif Atlas
- Homologous match to IL_5J7L_054
- Geometric discrepancy: 0.1414
- The information below is about IL_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8EKC|1|a|U|1247
8EKC|1|a|A|1248
8EKC|1|a|C|1249
8EKC|1|a|A|1250
8EKC|1|a|A|1251
8EKC|1|a|A|1252
8EKC|1|a|G|1253
*
8EKC|1|a|C|1284
8EKC|1|a|A|1285
8EKC|1|a|U|1286
8EKC|1|a|A|1287
8EKC|1|a|A|1288
8EKC|1|a|A|1289
8EKC|1|a|G|1290
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
Coloring options: