IL_8EKC_184

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKC_184 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0949

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8EKC|1|A|U|1851
8EKC|1|A|U|1852
8EKC|1|A|A|1853
8EKC|1|A|A|1854
8EKC|1|A|U|1855
8EKC|1|A|U|1856
8EKC|1|A|G|1857
8EKC|1|A|A|1858
8EKC|1|A|U|1859
8EKC|1|A|G|1860
*
8EKC|1|A|U|1882
8EKC|1|A|U|1883
8EKC|1|A|G|1884
8EKC|1|A|A|1885
8EKC|1|A|U|1886
8EKC|1|A|C|1887
8EKC|1|A|G|1888
8EKC|1|A|A|1889
8EKC|1|A|A|1890
8EKC|1|A|G|1891

Current chains

Chain A

23S Ribosomal RNA

Nearby chains