IL_8EMM_013
3D structure
- PDB id
- 8EMM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 8EMM|1|A|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EMM_013 not in the Motif Atlas
- Homologous match to IL_5J7L_012
- Geometric discrepancy: 0.1225
- The information below is about IL_5J7L_012
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.6
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8EMM|1|A|G|147
8EMM|1|A|G|148
8EMM|1|A|A|149
8EMM|1|A|U|150
8EMM|1|A|A|151
8EMM|1|A|A|152
8EMM|1|A|C|153
*
8EMM|1|A|G|168
8EMM|1|A|C|169
8EMM|1|A|U|170
8EMM|1|A|A|171
8EMM|1|A|A|172
8EMM|1|A|U|173
8EMM|1|A|A|174
8EMM|1|A|C|175
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain T
- 30S ribosomal protein S20
Coloring options: