3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GGAGUACG*UAAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EMM_038 not in the Motif Atlas
Homologous match to IL_5J7L_038
Geometric discrepancy: 0.0722
The information below is about IL_5J7L_038
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

8EMM|1|A|G|887
8EMM|1|A|G|888
8EMM|1|A|A|889
8EMM|1|A|G|890
8EMM|1|A|U|891
8EMM|1|A|A|892
8EMM|1|A|C|893
8EMM|1|A|G|894
*
8EMM|1|A|U|905
8EMM|1|A|A|906
8EMM|1|A|A|907
8EMM|1|A|A|908
8EMM|1|A|A|909
8EMM|1|A|C|910

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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