3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
G(4OC)CC*G(UR3)AAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EMM_060 not in the Motif Atlas
Geometric match to IL_4V88_464
Geometric discrepancy: 0.079
The information below is about IL_4V88_464
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65718.1
Basepair signature
cWW-cSH-cWS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

8EMM|1|A|G|1401
8EMM|1|A|4OC|1402
8EMM|1|A|C|1403
8EMM|1|A|C|1404
*
8EMM|1|A|G|1497
8EMM|1|A|UR3|1498
8EMM|1|A|A|1499
8EMM|1|A|A|1500
8EMM|1|A|C|1501

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12
Chain X
mRNA
Chain Z
Transfer RNA; tRNA
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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