IL_8EMM_083

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8EMM|1|a|G|801, 8EMM|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EMM_083 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0479

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8EMM|1|a|G|674
8EMM|1|a|A|675
8EMM|1|a|A|676
8EMM|1|a|A|677
8EMM|1|a|C|678
*
8EMM|1|a|G|799
8EMM|1|a|A|800
8EMM|1|a|G|801
8EMM|1|a|A|802
8EMM|1|a|U|803
8EMM|1|a|A|804
8EMM|1|a|G|805
8EMM|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15