IL_8EMM_090

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases

8EMM|1|a|U|846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EMM_090 not in the Motif Atlas

Geometric match to IL_5J7L_267

Geometric discrepancy: 0.1094

The information below is about IL_5J7L_267

Detailed Annotation

90 degree turn

Broad Annotation

90 degree turn

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

8EMM|1|a|A|844
8EMM|1|a|A|845
8EMM|1|a|U|846
8EMM|1|a|U|847
*
8EMM|1|a|A|933
8EMM|1|a|U|934

Current chains

Chain a

23S rRNA

Nearby chains

Chain y

50S ribosomal protein L30