IL_8EMM_111

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8EMM|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EMM_111 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0561

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8EMM|1|a|C|1208
8EMM|1|a|U|1209
8EMM|1|a|G|1210
8EMM|1|a|C|1211
8EMM|1|a|G|1212
8EMM|1|a|A|1213
8EMM|1|a|A|1214
8EMM|1|a|G|1215
*
8EMM|1|a|U|1234
8EMM|1|a|G|1235
8EMM|1|a|G|1236
8EMM|1|a|A|1237
8EMM|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L20