3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CUAU*AAAUG
Length
9 nucleotides
Bulged bases
8EMM|1|a|U|1554
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EMM_120 not in the Motif Atlas
Homologous match to IL_5J7L_297
Geometric discrepancy: 0.0618
The information below is about IL_5J7L_297
Detailed Annotation
tSH-tHW
Broad Annotation
No text annotation
Motif group
IL_99646.2
Basepair signature
cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8EMM|1|a|C|1437
8EMM|1|a|U|1438
8EMM|1|a|A|1439
8EMM|1|a|U|1440
*
8EMM|1|a|A|1551
8EMM|1|a|A|1552
8EMM|1|a|A|1553
8EMM|1|a|U|1554
8EMM|1|a|G|1555

Current chains

Chain a
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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