3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
UGAGG*UGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EMM_133 not in the Motif Atlas
Homologous match to IL_5J7L_310
Geometric discrepancy: 0.1101
The information below is about IL_5J7L_310
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_50730.2
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
19

Unit IDs

8EMM|1|a|U|1720
8EMM|1|a|G|1721
8EMM|1|a|A|1722
8EMM|1|a|G|1723
8EMM|1|a|G|1724
*
8EMM|1|a|U|1736
8EMM|1|a|G|1737
8EMM|1|a|G|1738
8EMM|1|a|A|1739
8EMM|1|a|G|1740

Current chains

Chain a
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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