IL_8EMM_184

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EMM_184 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0517

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8EMM|1|a|U|1851
8EMM|1|a|U|1852
8EMM|1|a|A|1853
8EMM|1|a|A|1854
8EMM|1|a|U|1855
8EMM|1|a|U|1856
8EMM|1|a|G|1857
8EMM|1|a|A|1858
8EMM|1|a|U|1859
8EMM|1|a|G|1860
*
8EMM|1|a|U|1882
8EMM|1|a|U|1883
8EMM|1|a|G|1884
8EMM|1|a|A|1885
8EMM|1|a|U|1886
8EMM|1|a|C|1887
8EMM|1|a|G|1888
8EMM|1|a|A|1889
8EMM|1|a|A|1890
8EMM|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains