IL_8ETI_014

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ETI_014 not in the Motif Atlas

Geometric match to IL_4WF9_083

Geometric discrepancy: 0.139

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8ETI|1|1|G|280
8ETI|1|1|A|281
8ETI|1|1|G|282
*
8ETI|1|1|C|299
8ETI|1|1|U|300
8ETI|1|1|C|301

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain A

Ribosome biogenesis protein brx1

Chain N

60S ribosomal protein L15-A

Chain i

60S ribosomal protein L36-B