IL_8ETI_016
3D structure
- PDB id
- 8ETI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fkbp39 associated 60S nascent ribosome State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAC*GAGUUAAAUAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 8ETI|1|1|U|406, 8ETI|1|1|A|410
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ETI_016 not in the Motif Atlas
- Geometric match to IL_5TBW_014
- Geometric discrepancy: 0.1515
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8ETI|1|1|G|384
8ETI|1|1|A|385
8ETI|1|1|A|386
8ETI|1|1|C|387
*
8ETI|1|1|G|398
8ETI|1|1|A|399
8ETI|1|1|G|400
8ETI|1|1|U|401
8ETI|1|1|U|402
8ETI|1|1|A|403
8ETI|1|1|A|404
8ETI|1|1|A|405
8ETI|1|1|U|406
8ETI|1|1|A|407
8ETI|1|1|G|408
8ETI|1|1|U|409
8ETI|1|1|A|410
8ETI|1|1|C|411
Current chains
- Chain 1
- RNA (1564-MER)
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 3
- Protein mak16
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26
- Chain x
- Brix domain-containing protein C4F8.04
Coloring options: