IL_8ETI_017
3D structure
- PDB id
- 8ETI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fkbp39 associated 60S nascent ribosome State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ETI_017 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0877
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8ETI|1|1|G|412
8ETI|1|1|U|413
8ETI|1|1|G|414
8ETI|1|1|A|415
8ETI|1|1|A|416
8ETI|1|1|A|417
8ETI|1|1|U|418
*
8ETI|1|2|A|21
8ETI|1|2|C|22
8ETI|1|2|G|23
8ETI|1|2|G|24
8ETI|1|2|A|25
8ETI|1|2|U|26
8ETI|1|2|C|27
Current chains
- Chain 1
- RNA (1564-MER)
- Chain 2
- RNA (152-MER)
Nearby chains
- Chain C
- 60S ribosomal protein L4-B
- Chain P
- 60S ribosomal protein L17-A
- Chain e
- 60S ribosomal protein L32-A
- Chain x
- Brix domain-containing protein C4F8.04
Coloring options: