IL_8ETI_018

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGA*UAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ETI_018 not in the Motif Atlas

Geometric match to IL_6IA2_005

Geometric discrepancy: 0.2936

The information below is about IL_6IA2_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8ETI|1|1|U|457
8ETI|1|1|G|458
8ETI|1|1|A|459
*
8ETI|1|1|U|492
8ETI|1|1|A|494
8ETI|1|1|A|495

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain 3

Protein mak16

Chain 5

Ribosome biogenesis protein nsa1