IL_8ETI_039

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8ETI|1|1|U|1239

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ETI_039 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.4908

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8ETI|1|1|G|1238
8ETI|1|1|U|1239
8ETI|1|1|G|1240
*
8ETI|1|1|C|1327
8ETI|1|1|C|1328

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain S

60S ribosomal protein L20-A

Chain r

Ribosome biogenesis protein nsa2