IL_8ETI_043

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8ETI|1|1|A|1294

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ETI_043 not in the Motif Atlas

Homologous match to IL_5TBW_056

Geometric discrepancy: 0.4047

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8ETI|1|1|G|1293
8ETI|1|1|A|1294
8ETI|1|1|G|1295
8ETI|1|1|U|1296
8ETI|1|1|G|1297
*
8ETI|1|1|C|1306
8ETI|1|1|U|1307
8ETI|1|1|C|1308

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain W

Ribosome assembly factor mrt4