IL_8ETI_047

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

8ETI|1|1|U|1433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ETI_047 not in the Motif Atlas

Geometric match to IL_4WF9_088

Geometric discrepancy: 0.2575

The information below is about IL_4WF9_088

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8ETI|1|1|U|1432
8ETI|1|1|U|1433
8ETI|1|1|G|1434
*
8ETI|1|1|U|1445
8ETI|1|1|G|1446

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain e

60S ribosomal protein L32-A

Chain x

Brix domain-containing protein C4F8.04