IL_8ETI_052

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

8ETI|1|1|A|3006

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ETI_052 not in the Motif Atlas

Homologous match to IL_8C3A_119

Geometric discrepancy: 0.2022

The information below is about IL_8C3A_119

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

8ETI|1|1|U|2986
8ETI|1|1|A|2987
*
8ETI|1|1|U|3004
8ETI|1|1|A|3005
8ETI|1|1|A|3006
8ETI|1|1|G|3007

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain z

UPF0642 protein C32H8.05