IL_8ETI_054

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ETI_054 not in the Motif Atlas

Homologous match to IL_5TBW_115

Geometric discrepancy: 0.1905

The information below is about IL_5TBW_115

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8ETI|1|1|A|3108
8ETI|1|1|U|3109
8ETI|1|1|U|3110
*
8ETI|1|1|A|3136
8ETI|1|1|U|3137
8ETI|1|1|U|3138

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain B

60S ribosomal protein L3-A

Chain V

60S ribosomal protein L23-A

Chain z

UPF0642 protein C32H8.05