IL_8ETI_063

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8ETI|1|1|U|3420

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ETI_063 not in the Motif Atlas

Geometric match to IL_7RQB_038

Geometric discrepancy: 0.3372

The information below is about IL_7RQB_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

8ETI|1|1|G|3419
8ETI|1|1|U|3420
8ETI|1|1|G|3421
*
8ETI|1|1|C|3488
8ETI|1|1|C|3489

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain B

60S ribosomal protein L3-A

Chain d

60S ribosomal protein L31