IL_8ETI_073

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

8ETI|1|1|U|269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ETI_073 not in the Motif Atlas

Geometric match to IL_6MWN_006

Geometric discrepancy: 0.2807

The information below is about IL_6MWN_006

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8ETI|1|1|A|165
8ETI|1|1|A|166
*
8ETI|1|1|U|268
8ETI|1|1|U|269
8ETI|1|1|U|270

Current chains

Chain 1

RNA (1564-MER)

Nearby chains

Chain D

ATP-dependent RNA helicase has1

Chain L

60S ribosomal protein L13

Chain m

Ribosome biogenesis protein erb1