IL_8ETI_078

3D structure

PDB id

8ETI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fkbp39 associated 60S nascent ribosome State 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUG*UACC

Length

7 nucleotides

Bulged bases

8ETI|1|6|A|180, 8ETI|1|6|C|181

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ETI_078 not in the Motif Atlas

Geometric match to IL_4WF9_047

Geometric discrepancy: 0.3439

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

8ETI|1|6|G|103
8ETI|1|6|U|104
8ETI|1|6|G|105
*
8ETI|1|6|U|179
8ETI|1|6|A|180
8ETI|1|6|C|181
8ETI|1|6|C|182

Current chains

Chain 6

RNA (125-MER)

Nearby chains

Chain o

Uncharacterized RNA-binding protein C1827.05c

Chain t

60S ribosomal protein L7-A