IL_8EUB_071

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

AUUCUUC*GGAAUAGUU

Length

16 nucleotides

Bulged bases

8EUB|1|A1|U|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EUB|1|A1|A|1625
8EUB|1|A1|U|1626
8EUB|1|A1|U|1627
8EUB|1|A1|C|1628
8EUB|1|A1|U|1629
8EUB|1|A1|U|1630
8EUB|1|A1|C|1631
*
8EUB|1|A1|G|1811
8EUB|1|A1|G|1812
8EUB|1|A1|A|1813
8EUB|1|A1|A|1814
8EUB|1|A1|U|1815
8EUB|1|A1|A|1816
8EUB|1|A1|G|1817
8EUB|1|A1|U|1818
8EUB|1|A1|U|1819

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AZ

60S ribosomal protein L27-A