IL_8EUB_087
3D structure
- PDB id
- 8EUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8EUB|1|A1|U|2159, 8EUB|1|A1|U|2175, 8EUB|1|A1|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EUB_087 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.0674
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8EUB|1|A1|C|2156
8EUB|1|A1|G|2157
8EUB|1|A1|A|2158
8EUB|1|A1|U|2159
8EUB|1|A1|G|2160
8EUB|1|A1|G|2161
*
8EUB|1|A1|U|2173
8EUB|1|A1|G|2174
8EUB|1|A1|U|2175
8EUB|1|A1|U|2176
8EUB|1|A1|G|2177
8EUB|1|A1|A|2178
8EUB|1|A1|C|2179
8EUB|1|A1|G|2180
Current chains
- Chain A1
- 28S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain Ap
- 60S ribosomal protein L43-A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: