IL_8EUB_120

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CUC*GUG(A2M)G

Length

8 nucleotides

Bulged bases

8EUB|1|A1|G|2945

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EUB_120 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0498

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8EUB|1|A1|C|2879
8EUB|1|A1|U|2880
8EUB|1|A1|C|2881
*
8EUB|1|A1|G|2943
8EUB|1|A1|U|2944
8EUB|1|A1|G|2945
8EUB|1|A1|A2M|2946
8EUB|1|A1|G|2947

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AV

60S ribosomal protein L23-A