IL_8EUB_142

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EUB_142 not in the Motif Atlas

Homologous match to IL_5TBW_128

Geometric discrepancy: 0.1566

The information below is about IL_5TBW_128

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8EUB|1|A1|C|3235
8EUB|1|A1|U|3236
8EUB|1|A1|U|3237
8EUB|1|A1|G|3238
*
8EUB|1|A1|C|3249
8EUB|1|A1|U|3250
8EUB|1|A1|U|3251
8EUB|1|A1|G|3252

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AO

60S ribosomal protein L16-A