IL_8EUB_165
3D structure
- PDB id
- 8EUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 8EUB|1|B5|U|45, 8EUB|1|B5|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EUB_165 not in the Motif Atlas
- Homologous match to IL_4V88_387
- Geometric discrepancy: 0.0879
- The information below is about IL_4V88_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77761.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8EUB|1|B5|G|42
8EUB|1|B5|A|43
8EUB|1|B5|U|44
8EUB|1|B5|U|45
8EUB|1|B5|A|46
8EUB|1|B5|A|47
8EUB|1|B5|G|48
*
8EUB|1|B5|C|431
8EUB|1|B5|G|432
8EUB|1|B5|C|433
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BX
- 40S ribosomal protein S23-A
- Chain DC
- Elongation factor 2
Coloring options: