IL_8EUB_191
3D structure
- PDB id
- 8EUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EUB_191 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.1058
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
8EUB|1|B5|A|550
8EUB|1|B5|G|551
8EUB|1|B5|G|552
8EUB|1|B5|G|553
8EUB|1|B5|C|554
8EUB|1|B5|A|555
8EUB|1|B5|A|556
8EUB|1|B5|G|557
*
8EUB|1|B5|C|587
8EUB|1|B5|U|588
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BC
- RPS2 isoform 1
- Chain BJ
- 40S ribosomal protein S9-A
- Chain Be
- 40S ribosomal protein S30-A
Coloring options: