IL_8EUB_215

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EUB_215 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0891

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8EUB|1|B5|G|1111
8EUB|1|B5|G|1112
8EUB|1|B5|A|1113
8EUB|1|B5|G|1114
8EUB|1|B5|U|1115
8EUB|1|B5|A|1116
8EUB|1|B5|U|1117
8EUB|1|B5|G|1118
*
8EUB|1|B5|U|1129
8EUB|1|B5|G|1130
8EUB|1|B5|A|1131
8EUB|1|B5|A|1132
8EUB|1|B5|A|1133
8EUB|1|B5|C|1134

Current chains

Chain B5

18S rRNA

Nearby chains

Chain An

60S ribosomal protein L41-A

Chain BX

40S ribosomal protein S23-A