IL_8EUB_232

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GUGC*GUUAUC

Length

10 nucleotides

Bulged bases

8EUB|1|B5|A|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EUB_232 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3543

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8EUB|1|B5|G|1352
8EUB|1|B5|U|1353
8EUB|1|B5|G|1354
8EUB|1|B5|C|1355
*
8EUB|1|B5|G|1368
8EUB|1|B5|U|1369
8EUB|1|B5|U|1370
8EUB|1|B5|A|1371
8EUB|1|B5|U|1372
8EUB|1|B5|C|1373

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BQ

40S ribosomal protein S16-A

Chain BT

40S ribosomal protein S19-A

Chain BU

RPS20 isoform 1