IL_8EUB_266
3D structure
- PDB id
- 8EUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- C(5MC)A(A2M)(A2M)UGCCUC(OMG)*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 8EUB|1|A1|A2M|2281, 8EUB|1|A1|C|2287, 8EUB|1|A1|C|2306
- QA status
- Modified nucleotides: 5MC, A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EUB_266 not in the Motif Atlas
- Homologous match to IL_8C3A_095
- Geometric discrepancy: 0.0613
- The information below is about IL_8C3A_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8EUB|1|A1|C|2277
8EUB|1|A1|5MC|2278
8EUB|1|A1|A|2279
8EUB|1|A1|A2M|2280
8EUB|1|A1|A2M|2281
8EUB|1|A1|U|2282
8EUB|1|A1|G|2283
8EUB|1|A1|C|2284
8EUB|1|A1|C|2285
8EUB|1|A1|U|2286
8EUB|1|A1|C|2287
8EUB|1|A1|OMG|2288
*
8EUB|1|A1|C|2304
8EUB|1|A1|G|2305
8EUB|1|A1|C|2306
8EUB|1|A1|G|2307
Current chains
- Chain A1
- 28S rRNA
Nearby chains
- Chain An
- 60S ribosomal protein L41-A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: