IL_8EV6_013
3D structure
- PDB id
- 8EV6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.946 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAGC
- Length
- 18 nucleotides
- Bulged bases
- 8EV6|1|1A|U|529, 8EV6|1|1A|G|533
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EV6_013 not in the Motif Atlas
- Homologous match to IL_7RQB_014
- Geometric discrepancy: 0.0561
- The information below is about IL_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.6
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8EV6|1|1A|G|507
8EV6|1|1A|A|508
8EV6|1|1A|A|509
8EV6|1|1A|C|510
*
8EV6|1|1A|G|521
8EV6|1|1A|A|522
8EV6|1|1A|G|523
8EV6|1|1A|U|524
8EV6|1|1A|G|525
8EV6|1|1A|A|526
8EV6|1|1A|A|527
8EV6|1|1A|A|528
8EV6|1|1A|U|529
8EV6|1|1A|A|530
8EV6|1|1A|G|531
8EV6|1|1A|A|532
8EV6|1|1A|G|533
8EV6|1|1A|C|534
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1W
- 50S ribosomal protein L22
- Chain 1Y
- 50S ribosomal protein L24
Coloring options: