IL_8EV6_017

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8EV6|1|1A|G|848, 8EV6|1|1A|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EV6_017 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0418

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8EV6|1|1A|G|721
8EV6|1|1A|A|722
8EV6|1|1A|A|723
8EV6|1|1A|A|724
8EV6|1|1A|C|725
*
8EV6|1|1A|G|846
8EV6|1|1A|A|847
8EV6|1|1A|G|848
8EV6|1|1A|A|849
8EV6|1|1A|U|850
8EV6|1|1A|A|851
8EV6|1|1A|G|852
8EV6|1|1A|C|853

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15