IL_8EV6_054

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

8EV6|1|1A|U|1466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EV6_054 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.0821

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

8EV6|1|1A|C|1463
8EV6|1|1A|G|1464
8EV6|1|1A|A|1465
8EV6|1|1A|U|1466
8EV6|1|1A|G|1467
*
8EV6|1|1A|C|1624
8EV6|1|1A|U|1625
8EV6|1|1A|A|1626
8EV6|1|1A|A|1627
8EV6|1|1A|G|1628

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains