IL_8EV6_197

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8EV6|1|2A|G|801, 8EV6|1|2A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EV6_197 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.059

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8EV6|1|2A|G|674
8EV6|1|2A|A|675
8EV6|1|2A|A|676
8EV6|1|2A|A|677
8EV6|1|2A|C|678
*
8EV6|1|2A|G|799
8EV6|1|2A|A|800
8EV6|1|2A|G|801
8EV6|1|2A|A|802
8EV6|1|2A|U|803
8EV6|1|2A|A|804
8EV6|1|2A|G|805
8EV6|1|2A|C|806

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15