IL_8EV6_262

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EV6_262 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.3805

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

8EV6|1|2A|G|2110
8EV6|1|2A|C|2111
8EV6|1|2A|G|2112
8EV6|1|2A|U|2113
8EV6|1|2A|A|2114
8EV6|1|2A|G|2115
8EV6|1|2A|G|2116
8EV6|1|2A|A|2117
8EV6|1|2A|U|2118
8EV6|1|2A|A|2119
8EV6|1|2A|G|2120
*
8EV6|1|2A|C|2178
8EV6|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA