IL_8EV7_135

3D structure

PDB id

8EV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8EV7|1|1a|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EV7_135 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0895

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8EV7|1|1a|C|569
8EV7|1|1a|G|570
8EV7|1|1a|U|571
8EV7|1|1a|A|572
8EV7|1|1a|A|573
8EV7|1|1a|A|574
8EV7|1|1a|G|575
*
8EV7|1|1a|C|880
8EV7|1|1a|G|881

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1e

30S ribosomal protein S5

Chain 1l

30S ribosomal protein S12

Chain 1q

30S ribosomal protein S17