IL_8EV7_191

3D structure

PDB id

8EV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

8EV7|1|2A|U|504, 8EV7|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EV7_191 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0569

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8EV7|1|2A|G|481
8EV7|1|2A|A|482
8EV7|1|2A|A|483
8EV7|1|2A|C|484
*
8EV7|1|2A|G|496
8EV7|1|2A|A|497
8EV7|1|2A|G|498
8EV7|1|2A|U|499
8EV7|1|2A|G|500
8EV7|1|2A|A|501
8EV7|1|2A|A|502
8EV7|1|2A|A|503
8EV7|1|2A|U|504
8EV7|1|2A|A|505
8EV7|1|2A|G|506
8EV7|1|2A|A|507
8EV7|1|2A|G|508
8EV7|1|2A|C|509

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24