IL_8EV7_251

3D structure

PDB id

8EV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

8EV7|1|2A|A|1938, 8EV7|1|2A|U|1944, 8EV7|1|2A|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EV7_251 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1189

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

8EV7|1|2A|C|1934
8EV7|1|2A|G|1935
8EV7|1|2A|A|1936
8EV7|1|2A|A|1937
8EV7|1|2A|A|1938
8EV7|1|2A|5MU|1939
8EV7|1|2A|U|1940
8EV7|1|2A|C|1941
8EV7|1|2A|5MC|1942
8EV7|1|2A|U|1943
8EV7|1|2A|U|1944
8EV7|1|2A|G|1945
*
8EV7|1|2A|C|1961
8EV7|1|2A|5MC|1962
8EV7|1|2A|U|1963
8EV7|1|2A|G|1964

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2w

Transfer RNA; tRNA