IL_8EVP_021
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8EVP|1|A1|A|519, 8EVP|1|A1|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EVP_021 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.0759
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8EVP|1|A1|G|517
8EVP|1|A1|G|518
8EVP|1|A1|A|519
8EVP|1|A1|U|520
8EVP|1|A1|A|521
8EVP|1|A1|A|522
8EVP|1|A1|A|523
8EVP|1|A1|U|524
8EVP|1|A1|C|525
*
8EVP|1|A1|G|567
8EVP|1|A1|G|568
8EVP|1|A1|A|569
8EVP|1|A1|A|570
8EVP|1|A1|U|571
8EVP|1|A1|A|572
8EVP|1|A1|C|573
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AC
- RPL4A isoform 1
- Chain AF
- 60S ribosomal protein L7-A
- Chain AM
- 60S ribosomal protein L14-A
- Chain AS
- 60S ribosomal protein L20
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