IL_8EVP_028

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVP_028 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1445

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8EVP|1|A1|C|758
8EVP|1|A1|U|759
8EVP|1|A1|G|760
8EVP|1|A1|A|761
8EVP|1|A1|U|762
8EVP|1|A1|G|763
*
8EVP|1|A1|C|768
8EVP|1|A1|G|769
8EVP|1|A1|G|770
8EVP|1|A1|A|771
8EVP|1|A1|U|772
8EVP|1|A1|G|773

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L13-A

Chain Aa

60S ribosomal protein L28

Chain Ao

60S ribosomal protein L42-A