IL_8EVP_038

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

8EVP|1|A1|U|981, 8EVP|1|A1|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVP|1|A1|C|977
8EVP|1|A1|G|978
8EVP|1|A1|U|979
8EVP|1|A1|A|980
8EVP|1|A1|U|981
8EVP|1|A1|C|982
*
8EVP|1|A1|G|1101
8EVP|1|A1|A|1102
8EVP|1|A1|A|1103
8EVP|1|A1|G|1104

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L7-A

Chain AQ

60S ribosomal protein L18-A

Chain Ab

RPL29 isoform 1