IL_8EVP_058

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8EVP|1|A1|G|1236

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVP_058 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.397

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8EVP|1|A1|G|1234
8EVP|1|A1|U|1235
8EVP|1|A1|G|1236
8EVP|1|A1|G|1237
8EVP|1|A1|C|1238
*
8EVP|1|A1|G|1250
8EVP|1|A1|A|1251
8EVP|1|A1|A|1252
8EVP|1|A1|U|1253
8EVP|1|A1|C|1254

Current chains

Chain A1

25S rRNA

Nearby chains