IL_8EVP_065

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUCAAC*GGAC

Length

10 nucleotides

Bulged bases

8EVP|1|A1|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVP_065 not in the Motif Atlas

Homologous match to IL_8C3A_066

Geometric discrepancy: 0.1045

The information below is about IL_8C3A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93630.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8EVP|1|A1|G|1500
8EVP|1|A1|U|1501
8EVP|1|A1|C|1502
8EVP|1|A1|A|1503
8EVP|1|A1|A|1504
8EVP|1|A1|C|1505
*
8EVP|1|A1|G|1513
8EVP|1|A1|G|1514
8EVP|1|A1|A|1515
8EVP|1|A1|C|1516

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AP

60S ribosomal protein L17-A

Chain AR

60S ribosomal protein L19-A

Chain Al

60S ribosomal protein L39