IL_8EVP_099

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AGA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EVP_099 not in the Motif Atlas

Geometric match to IL_4WF9_047

Geometric discrepancy: 0.3247

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8EVP|1|A1|A|2441
8EVP|1|A1|G|2442
8EVP|1|A1|A|2443
*
8EVP|1|A1|U|2504
8EVP|1|A1|U|2505
8EVP|1|A1|U|2506

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Ai

60S ribosomal protein L36-A

Chain BB

RPS1A isoform 1